Sample information |
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Picture |
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Location | |
Collection date | 09/03/2024 |
Captive / Cultivated? | Wild-caught |
Group | Benedictine University |
Observations | Collected by Fall 2024 students Medium-sized true bug. The body is elongate-oval and somewhat flattened. Color varies but is usually brownish to tan with some darker and lighter markings. Small head with long, thin antennae.
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Putative identification | Arthropoda Hexapoda Insecta Hemiptera Miridae Neurocolpus Neurocolpus nubilus |
Methods |
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Extraction kit | DNeasy (Qiagen) blood and tissue kit |
DNA extraction location | Abdomen |
Single or Duplex PCR | Single Reaction |
Gel electrophoresis system | Standard electrophoresis system |
Buffer | TAE |
DNA stain | SYBR Safe |
Gel images |
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Protocol notes | |
Results |
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Wolbachia presence | No |
Confidence level | High |
Explanation of confidence level | Even though my controls did not work as they were supposed for the gel electrophoresis. The control W+ 7th lane Wolbachia DNA and arthropod was DNA negative, expected bands for both. PCR may have failed due to pipetting error, missing reagent, or contamination Control DNA should have shown a band for the arthropod DNA, but only had a band for Wolbachia. The concentration of DNA may have been too low for arthropod primers to amplify, the band present, a had moderate-intensity. However, my BLAST DNA sequence results also showed no presence of Wolbachia, which showed my arthropod was unaffected, which led to a high confidence level. |
Wolbachia 16S sequence | |
Arthropod COI sequence | Download FASTA
TGTTAATAGTATTGTNATGNNTCCTGCTAGAAN
BLAST at The Wolbachia Project BLAST at NCBI
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Summary | The Neurocolpus nubilus was found to be negative for Wolbachia. |