Sample information |
|
| Picture |
|
|---|---|
| Location | |
| Collection date | 09/03/2024 |
| Captive / Cultivated? | Wild-caught |
| Group | Benedictine University |
| Observations | Collected by Fall 2024 students. |
| Putative identification | Arthropoda Insecta Coleoptera Coccinellidae Harmonia Harmonia axyridis |
Methods |
|
| Extraction kit | DNeasy (Qiagen) blood and tissue kit |
| DNA extraction location | Abdomen |
| Single or Duplex PCR | Single Reaction |
| Gel electrophoresis system | Standard electrophoresis system |
| Buffer | TAE |
| DNA stain | SYBR Safe |
| Gel images |
|
| Protocol notes | |
Results |
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| Wolbachia presence | Yes |
| Confidence level | Low |
| Explanation of confidence level | The gel electrophoresis resulted in a barely visible band for the presence of Wolbachia, and the BLAST match was lower than the ideal 99%-100%. |
| Wolbachia 16S sequence | Download FASTA
ATTANNTTANGNTTGCGCACCTTGNNNNCCATTGTAGACACCATTGTAGCACGTGTGTAGCCCACTCCATAAAGGCCATGATGACTTGACATCATCNNNNCCTTNNNNNNNNTTATCACTGGCAGTTTCCTTAAAGTACTCNNNNTTACCTGATAGCAACTAAGGATGAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCTCACGACACGAGCTGACGACAGCCATGCAACACTTGTGTAAAATCCNNNNNAACCGACCCTATCCCTTCGAATAGGTATG
BLAST at The Wolbachia Project BLAST at NCBI
|
| Arthropod COI sequence | Download FASTA
TGCTGTAATAAGAACAGATCATACAAATAAAGGAGTTTTATCAAGTATTATACCAAATGGACGTATATTTATAATAGTTG AAATGAAATTTACTGCACCTAAAATTGANGAAATTCCTGCTAAATGTAAACTANNNATCNCTAAATCTACTGAANGCCCA NTANGNGTTAAATTANAAGAAAGAGGAGGGNAAACAGTTCATCCTGTTCCTGCCCCTATTTCTACGATTGTTCTTAAAAT TAAAAGAGTTAAAGCAGGGGGTAAAAGTCAAAATCTTATGTTATTTAATCGTGGAAATGCTATATCAGGAGCTCCAATTA TTAAAGGAACTAATCAATTTCCAAAACCCCNAATTATAATAGGTATTACTATAAAGAAAATTATAATGAAAGCATGAGCT GTAACAATTATATTATAAATTTGNTCGTTTCCNATTAATCTTCCTCTAGTTCCNAATTCTAACCGAATTAAAATACTTAA CGATGTNCCTACTATTCCTGCCCNTATTC
BLAST at The Wolbachia Project BLAST at NCBI
|
| Summary | The Harmonia axyridis was found to be postive for Wolbachia. |


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