Sample information |
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Picture |
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Location | |
Collection date | 08/19/2021 |
Captive / Cultivated? | Wild-caught |
Group | The School for Science and Math at Vanderbilt |
Observations | Turfgrass Ant with an unusually large gasterĀ and clear wings. The coloration is brown and honey colored with a pattern resembling stripes on the gaster. Anatomy of ant is otherwise typical. Found crawling on pavement next to Rudbeckia hirta flowers in the late afternoon. |
Putative identification | Arthropoda Hexapoda Insecta Hymenoptera Formicidae Lasius |
Methods |
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Extraction kit | DNeasy (Qiagen) |
DNA extraction location | Abdomen |
Single or Duplex PCR | Single Reaction |
Gel electrophoresis system | MiniOne |
Buffer | TBE |
DNA stain | GelGreen |
Gel images |
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Protocol notes | The PCR DNA analysis step was redone by the Bordenstein lab due to thermocycler malfunctions. Other than that the experiment went according to protocol. |
Results |
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Wolbachia presence | Yes |
Confidence level | High |
Explanation of confidence level | I have a high confidence level about the results of the wolbachia experiment testing. There is little to no contamination and the sequencing results are of high quality. |
Wolbachia 16S sequence | Download FASTA
Download AB1
TGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCATCCTTAGTTACCATCAGGTAATGCTGGGGACTTTAAGGAAACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGATGTCAAGTCATCATGGCCCTTATGGAGTGGGCTACACACGTGCTACAATGGTGGCTACAATGGGCTGCAAAGTCGCGAGGCTAAGCTAATCCCTTAAAAGCCATCTCAGTTCGGATTGTACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCACGCCACGGTGAATACGTTCTCGGGTCTTGTACACACTGCCCGTCA
BLAST at The Wolbachia Project BLAST at NCBI
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Arthropod COI sequence | Download FASTA
Download AB1
AATCGGTTCATCTATAAGAATAATTATTCGTCTAGAATTAGGATCATCTAATTCATTGATTAACAATGATCAAATTTATAATTCTATAGTTACAAGACATGCATTCATTATAATTTTCTTTATAGTTATGCCTTTCATAATTGGAGGATTTGGAAATTTCCTTGTACCTTTAATATTAGGCTCACCTGATATAGCTTATCCACGTATAAACAATATGAGATTTTGACTTTTACCCCCCTCAATTTCTCTTCTTATTTTAAGAAATTTTATTAATGATGGTGTTGGGACAGGATGAACTGTTTATCCTCCTTTAGCTTCAAATATTTTCCATAATGGACCTTCAGTTGATTTAACTATTTTTTCCCTCCATATTGCGGGTATATCTTCAATTTTAGGAGCTATTAATTTTATTTCAACTATCTTAAATATACATCACAAAAATTTTTCTATCGATAAAATCCCTTTACTTGTATGATCAATTTTAATTACTGCAATTTTACTTCTCTTATCCTTACCCGTTCTTGCAGGAGCTATTACTATACTTTTAACTGACCGTAATCTTAACACTTCATTTTTTGATCCATCAGGTGGTGGAGATCCTATTTTATATCAACATCTTTTTT
BLAST at The Wolbachia Project BLAST at NCBI
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Summary | The Lasius was found to be postive for Wolbachia. |