Sample information |
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Picture |
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Location | |
Collection date | 09/03/2024 |
Captive / Cultivated? | Wild-caught |
Group | Benedictine University |
Observations | Collected by Fall 2024 students. |
Putative identification | Arthropoda Hexapoda Insecta Hymenoptera Formicidae |
Methods |
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Extraction kit | DNeasy (Qiagen) blood and tissue kit. |
DNA extraction location | Whole arthropod |
Single or Duplex PCR | Single Reaction |
Gel electrophoresis system | Standard electrophoresis system |
Buffer | TAE |
DNA stain | SYBR Safe |
Gel images |
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Protocol notes | |
Results |
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Wolbachia presence | Yes |
Confidence level | Medium |
Explanation of confidence level | The reason I selected “Medium” for the confidence level is because my insect had a strong Wolbachia gel band, however, it had a BLAST match between 99.00% – 99.99% of 99.56%. |
Wolbachia 16S sequence | Download FASTA
Download AB1
TGGTTGTATCTCGGGGTTGACAGAACCGAAGAACGTATTCACCGTGGCGTGCTGACCACGATTCCTCGCGATTCAACTCCATGCACTCGAGTTGCAGAGTACAATCCGAACTGAGATGGCTTTTAAGGGATTAGCTTAGCCTCGCGACTTTGCAGCCCATTGTAGCCACCATTGTAGCACGTGTGTAGCCCACTCCATAAGGGCCATGATGACTTGACATCATCCCCACCTTCCTCCAGTTTATCACTGGCAGTTTCCTTAAAGTCCCCAGCATTACCTGATGGTAACTAAGGATGAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCTCACGACACGAGCTGACGACAGCCATGCAACACCTGTGTGAAATCCGGCCGAACCGACCCTATCCCTTGACTGCGTATGCCAGAACCCGCTATCCCTGAGCCCCGCCTTATCGTAGGAAAATCATGTGCGCAAAAGGCCAGCAATAGGACAGGATACTATAAAAAGAATCGTTGTGGGAGTTGACCATTAGCTCCTCCCCCCTGACTAGGATCGATTACAATTAATCTTCCTCTATAAGTGGCGTATCCCTAAATGACTATAAAGATAGAAGGCGCTACCATCTGGACCCTCCCTCGT
BLAST at The Wolbachia Project BLAST at NCBI
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Arthropod COI sequence | Download FASTA
Download AB1
TATCGTTGGTTGATTCAGAATCGGGTCTCCCCTCCTGAAGGGATCAAAAAATGAAGTATTTAAGTTTCGATCAGTTAATAATATTCGTAATAGCTCCAGCTAAAACGGGAAGGGATAATAAAAGTAAAATTCGCAGTGATTAAGATAGATCATACAAGTAGGGGAATTTTATCAATAGAAAAATTTTTATGATGTATATTAAGGATTGTTGAAATAAAATTAATAGCTCCTAAAATAGATGATATACCGGCAATATGAAGAGAAAAAATTGTTAAGTCTACAGAAGGCCCATTATGAAAAATATTTGAAGCTAAAGGAGGGTAGATAGTTCACCCAGTTCCAGTACCATCATTAATAAAGTTTCTTAAAAGTAATAGAGTGATGGAAGGAGGTAAAAGTCAAAATCTTATATTATTTATACGAGGATAAGCTATATCTGGCGATCCTAATATTAAAGGAATTAGAAAATTTCCAAATCCACCAATTATAAATGGTATTACTATAAAAAAGATTATAATAAAGGCATGATTAGTTACTAAAGAATTATAAATTTGATCATTATTAATTAATGAATTTGAAGAACCTAATTCTAATCGAATAATTATACTTATAGAAGATCCAATTATTCCAGCTCAGATAGCAAATAAAAAATAAAGAATTCCAATATCTTTATGTT
BLAST at The Wolbachia Project BLAST at NCBI
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Summary | The Formicidae was found to be postive for Wolbachia. |