Sample information |
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Picture |
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Location | |
Collection date | 09/03/2024 |
Captive / Cultivated? | Wild-caught |
Group | Benedictine University |
Observations | Collected by Fall 2024 students. |
Putative identification | Arthropoda Hexapoda Insecta Coleoptera Coccinellidae Harmonia Harmonia axyridis |
Methods |
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Extraction kit | DNeasy (Qiagen) blood and tissue kit |
DNA extraction location | Abdomen |
Single or Duplex PCR | Single Reaction |
Gel electrophoresis system | Standard electrophoresis system |
Buffer | TAE |
DNA stain | SYBR Safe |
Gel images |
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Protocol notes | |
Results |
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Wolbachia presence | Yes |
Confidence level | Low |
Explanation of confidence level | The gel electrophoresis resulted in a barely visible band for the presence of Wolbachia, and the BLAST match was lower than the ideal 99%-100%. |
Wolbachia 16S sequence | Download FASTA
ATTANNTTANGNTTGCGCACCTTGNNNNCCATTGTAGACACCATTGTAGCACGTGTGTAGCCCACTCCATAAAGGCCATGATGACTTGACATCATCNNNNCCTTNNNNNNNNTTATCACTGGCAGTTTCCTTAAAGTACTCNNNNTTACCTGATAGCAACTAAGGATGAGGGTTGCGCTCGTTGCGGGACTTAACCCAACATCTCACGACACGAGCTGACGACAGCCATGCAACACTTGTGTAAAATCCNNNNNAACCGACCCTATCCCTTCGAATAGGTATG
BLAST at The Wolbachia Project BLAST at NCBI
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Arthropod COI sequence | Download FASTA
TGCTGTAATAAGAACAGATCATACAAATAAAGGAGTTTTATCAAGTATTATACCAAATGGACGTATATTTATAATAGTTG AAATGAAATTTACTGCACCTAAAATTGANGAAATTCCTGCTAAATGTAAACTANNNATCNCTAAATCTACTGAANGCCCA NTANGNGTTAAATTANAAGAAAGAGGAGGGNAAACAGTTCATCCTGTTCCTGCCCCTATTTCTACGATTGTTCTTAAAAT TAAAAGAGTTAAAGCAGGGGGTAAAAGTCAAAATCTTATGTTATTTAATCGTGGAAATGCTATATCAGGAGCTCCAATTA TTAAAGGAACTAATCAATTTCCAAAACCCCNAATTATAATAGGTATTACTATAAAGAAAATTATAATGAAAGCATGAGCT GTAACAATTATATTATAAATTTGNTCGTTTCCNATTAATCTTCCTCTAGTTCCNAATTCTAACCGAATTAAAATACTTAA CGATGTNCCTACTATTCCTGCCCNTATTC
BLAST at The Wolbachia Project BLAST at NCBI
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Summary | The Harmonia axyridis was found to be postive for Wolbachia. |