Sample information |
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Picture |
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Location | |
Collection date | 09/03/2024 |
Captive / Cultivated? | Wild-caught |
Group | Benedictine University |
Observations | Collected by Fall 2024 students |
Putative identification | Arthropoda Hexapoda Insecta Hymenoptera Formicidae Formica Formica pallidefulva |
Methods |
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Extraction kit | DNeasy (Qiagen) blood and tissue kit |
DNA extraction location | Whole arthropod |
Single or Duplex PCR | Single Reaction |
Gel electrophoresis system | Standard electrophoresis system |
Buffer | TAE |
DNA stain | SYBR Safe |
Gel images |
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Protocol notes | |
Results |
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Wolbachia presence | No |
Confidence level | Medium |
Explanation of confidence level | I had a strong arthropod gel band, but no Wolbachia gel band |
Wolbachia 16S sequence | |
Arthropod COI sequence |
ATAATATGTTGATATAGATTGGGTCCCCCCTCCTGAAGGGTCAAAAAATGAAGTATTTAAGTTTCGGTCAGTTAATAATATTGTAATAGCCCCAGCTAAAACGGGAAGGGATAATAAAAGTAAAATTGCAGTGATTAAGATAGATCATACAAGTAGGGGAATTTTATCAATAGAAAAATTTTTATGATGTATATTAAGAATTGTTGAAATAAAATTAATAGCCCCTAAAATAGATGATATACCGGCAATATGAAGAGAAAAAATTGTTAAGTCTACAGAAGGTCCATTATGAAAAATATTTGAAGCTAAAGGAGGGTAGATAGTTCATCCAGTTCCAGTACCATCATTAATAAAGTTTCTTAAAAGTAATAGAGTGATGGAAGGAGGTAAAAGTCAAAATCTTATATTATTTATACGAGGATAAGCTATATCTGGTGACCCTAATATTAAAGGAATTAGAAAATTTCCAAATCCACCAATTATAAATGGTATTACTATAAAAAAGATTATAATAAAGGCATGATTAGTTACTAAAGAATTATAAATTTGATCATTATTAATTAATGAATTTGAAGAACCTAATTCTAATCGAATAATTATACTTATAGAAGATCCAATTATTCCAGCTCAGATAGCAAATAAAAAATAAAGAATTCCAATATCTTTATGATTTTGTTGACCCAATAATATGTTGATATAGATTGGGTCCCCCCTCCTGAAGGGTCAAAAAATGAAGTATTTAAGTTTCGGTCAGTTAATAATATTGTAATAGCCCCAGCTAAAACGGGAAGGGATAATAAAAGTAAAATTGCAGTGATTAAGATAGATCATACAAGTAGGGGAATTTTATCAATAGAAAAATTTTTATGATGTATATTAAGAATTGTTGAAATAAAATTAATAGCCCCTAAAATAGATGATATACCGGCAATATGAAGAGAAAAAATTGTTAAGTCTACAGAAGGTCCATTATGAAAAATATTTGAAGCTAAAGGAGGGT
BLAST at The Wolbachia Project BLAST at NCBI
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Summary | The Formica pallidefulva was found to be negative for Wolbachia. |