Sample information |
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| Picture |
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|---|---|
| Location | |
| Collection date | 09/30/2025 |
| Captive / Cultivated? | Wild-caught |
| Group | Berkshire Community College |
| Observations | my arthropod was a Dark-winged Fungus Gnats its order is diptara its family is Cecidomyiidae the scientific name is Genus Afrotricha, it does have Wolbachia |
| Putative identification | Arthropoda Insecta Diptera Sciaridae |
Methods |
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| Extraction kit | Monarch DNA extraction (NEB) |
| DNA extraction location | Whole arthropod |
| Single or Duplex PCR | Duplex Reaction |
| Gel electrophoresis system | Edvotek Gel Electrophoresis |
| Buffer | 1X TAE |
| DNA stain | SYBR Safe |
| Gel images |
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| Protocol notes | Gel electrophoresis system: Edvotek Gel Electrophoresis My first gel Image was taken on 10-21-25 and was run at 125 Volts for 30 minutes Using New England Biolabs 1 kb Plus DNA Ladder for Safe Stains (product # N0559S). This round told me that my arthropod tested false for Wolbachia Our second PCR reaction was set up on 10-28-25, used the same Taq polymerase as the first PCR reaction, and: was a Single. while using an annealing temperature of 55 degrees Celsius. Second Round: Gel electrophoresis system: Edvotek Gel Electrophoresis Buffer: 1X TAE DNA Stain: SYBR Safe Protocol notes: ADD the following statements: Our second Gel image was taken on 11-4-25 and: This week we did DNA sequencing. For our arthropods only had the ZK-1 Come out due to the CD-1 arthropod being too distorted and messy. |
Results |
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| Wolbachia presence | Unknown |
| Confidence level | Medium |
| Explanation of confidence level | my confidence would have been high because i did 2 PCRs and both times mine came back positive, however the BLAST results for the arthropod CO1 gene were a 100% match for Drosophila melanogaster, so it is likely that we mislabeled the sample and mixed it up with the positive control arthropod fruit fly. |
| Wolbachia 16S sequence | Download AB1
GTGTTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCATCCTTAGTTACCATCAGGTAATGCTGGGGACTTTAAGGAAACTGCCAGTGATAAACTGGAGGAAGGTGGGGATGATGTCAAGTCATCATGGCCCTTATGGAGTGGGCTACACACGTGCTACAATGGTGGCTACAATGGGCTGCAAAGTCGCGAGGCTAAGCTAATCCCTTAAAAGCCATCTCAGTTCGGATTGTACTCTGCAACTCGAGTGCATGAAGTTGGAATCGCTAGTAATCGTGGATCAGCACGCCACGGTGAATACGTTCTCGGGTCTTGTACACACTGCCCGTCACGCCATGGGAATTGGTTTCACTCGAAGCTA
BLAST at The Wolbachia Project BLAST at NCBI
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| Arthropod COI sequence | Download AB1
AGCTTGAGCTGGAATAGTTGGAACATCTTTAAGAATTTTAATTCGAGCTGAATTAGGACATCCTGGAGCATTAATTGGAGATGATCAAATTTATAATGTAATTGTAACTGCACATGCTTTTATTATAATTTTTTTTATAGTTATACCTATTATAATTGGTGGATTTGGAAATTGATTAGTGCCTTTAATATTAGGTGCTCCTGATATAGCATTCCCACGAATAAATAATATAAGATTTTGACTTCTACCTCCTGCTCTTTCTTTACTATTAGTAAGTAGAATAGTTGAAAATGGAGCTGGGACAGGATGAACTGTTTATCCACCTCTATCCGCTGGAATTGCTCATGGTGGAGCTTCAGTTGATTTAGCTATTTTTTCTCTACATTTAGCAGGAATTTCTTCAATTTTAGGAGCTGTAAATTTTATTACAACTGTAATTAATATACGATCAACAGGAATTTCATTAGATCGTATACCTTTATTTGTTTGATCAGTAGTTATTACTGCTTTATTATTATTATTATCACTTCCAGTACTAGCAGGAGCTATTACTATATTATTAACAGATCGAAATTTAAATACATCATTTTTTGACCCAGCGGGAGGAGGAGATCCTATTTTATACCAACATTTATTTTGA
BLAST at The Wolbachia Project BLAST at NCBI
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| Summary | |


CO1: Sequence
S16: Sequence 
European Paper Wasp
Woodworm Ant