Sample information |
|
| Picture |
|
|---|---|
| Location | |
| Collection date | 09/02/2025 |
| Captive / Cultivated? | Wild-caught |
| Group | Benedictine University |
| Observations | |
| Putative identification | Arthropoda |
Methods |
|
| Extraction kit | DNeasy (Qiagen) blood and tissue kit. |
| DNA extraction location | Abdomen |
| Single or Duplex PCR | Single Reaction |
| Gel electrophoresis system | Standard electrophoresis system |
| Buffer | TAE |
| DNA stain | SYBR Safe |
| Gel images |
|
| Protocol notes | |
Results |
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| Wolbachia presence | No |
| Confidence level | Medium |
| Explanation of confidence level | The BLAST results produced a 99.82% match, which strongly supports the identification but leaves a small margin for uncertainty. The controls also behaved as expected, further supporting the reliability of the data. The positive fruit fly control produced a clear Wolbachia band at the correct size, confirming that the PCR reagents and conditions were functioning properly. The negative control showed no bands, indicating that contamination did not occur. The arthropod sample displayed a strong COI band, demonstrating that both the DNA extraction and amplification of insect DNA were successful. However, no Wolbachia band was detected in the sample. The confidence level is best described as moderate due to the slight deviation from a perfect BLAST match. |
| Wolbachia 16S sequence |
TGCAGAGTACAATCCGAACTGAGATGTCTTTTAGGGATTAGCTTAGGCTTGCGCACCTTGCAACCCATTGTAGACACCAT TGTAGCACGTGTGTAGCCCACTCCATAAAGGCCATGATGACTTGACATCATCCCCACCTTCCTCCAGCTTATCACTGGCA GTTTCCTTAAAGTACTCAGCATTACCTGATAGCAACTAAGGATGAGGGTTGCACTCGTTGCGGGACTTAACCCAACATCT CACGACACGAGCTGACGACAGCCATGCAACACTTGTGTGAAATCCGGCCGAACCGACCCTATCCC
BLAST at The Wolbachia Project BLAST at NCBI
|
| Arthropod COI sequence |
ACAGGTAAAGATAATAAAAGTAAAATTGCTCGTAATTAAAACAGATCATGTAAATAAAGGTAAAAAATTTAATGAATGGG TTTTAATATGTATATTTAAAATTGTTACAATAAAATTAATAGCTCCTATAATGGATGAAATTCCAGCAATATGAAGAGAA AAAATTGATAAATCAACAGAAGGTGAATTATGTCCAATATTTGAAGATAAAGGTGGGTATAAAGTTCATCCTGTTCCTAC TCCTATTTTTATTATGTTTCTTATAATAAGCAAAAATAATGAGGGTGGTAAAAGTCAAAATCTTATATTATTTATTCGTG GGAAAGCTATATCAGGGGCTCCAAGTATTATAGGAATTAATCAATTTCCAAAACCTCCAATTATAAATGGTATAACTATA AAAAAAATTATTACTAAAGCATGGGCTGTAATAATTGAATTATAAAATTGATCATTATTAATAATTGAAGATGGTGTTCC TAATTCTAATCGAATTATTAATCTTAAAGATGTACCAATTATTCCAGCTCAAAGTCCAAAAATAAAATATA
BLAST at The Wolbachia Project BLAST at NCBI
|
| Summary | The Arthropoda was found to be negative for Wolbachia. |


Cisseps Fulvicollis
Aboud kanama
(no title)
Blaesoxipha sarcophagidae